Online Manual for the
WCIF-ImageJ collection

ImageJ
Image Processing and Analysis in Java

 
 

Click plugin-name to link to the plugin's homepage.

Animated GIF Kevin Weiner, FM Software, W. Rasband., 5

Animated Gif writer… Ryan Raz (http://rraz.ca)

Anisotropic Diffusion... Christopher Mei (christopher.mei at sophia.inria.fr)

AVI…Daniel Marsh (marshd@ninds.nih.gov), 5

BG Subtraction from ROI Michael Cammer (modified by T. Collins)

Bleach Correction W. Rasband (modified by T. Collins)

Calculator plus Wayne Rasdband, 19

Cell Counter Kurt De Vos (kd269@columbia.edu), 12

Colocalization Pierre Bourdoncle (bourdoncle@ijm.jussieu.fr), Institut Jacques Monod, Service Imagerie, Paris, 14

Colocalization finder Christophe Laummonerie, Jerome Mutterer, Institut de Biologie Moleculaire des Plantes, Strasbourg, France., 14

Concatenator Wayne Rasband, 24

Copy Pixel Size J. Anthony Parker, MD PhD (J.A.Parker@IEEE.org), 35

Copy-Paste to clipboard Amrit Aneja and Wayne Rasband, 36

Colocalisation Test Tony Collins, Wayne Rasband

Colocalisation Threshold Tony Collins, Wayne Rasband

Colour Merge Tony Collins, Wayne Rasband, 22

DeInterleave Russell Kincaid (rekincai@syr.edu), Tony Collins, 4

Delta F down Tony Collins, 33

Delta F up Tony Collins, 33

Disk based stack Wayne Rasband, 5

Dynamic ZProfile Kevin (Gali) Baler (gliblr at yahoo.com) and Wayne Rasband, 7

ExtendedFocus Jesse Berent, Brigitte Forster, Dimitri Van De Ville, Daniel Sage & Michael Unser, 26 Grouped ZProjector Charlie Holly, caholly at colby.edu, 26

Handle Extra File Types Gregory Jefferis (jefferis at Stanford.edu), 4

Image Correlator Plus Wayne Rasband, Tony Collins, 13

Interleave J. Anthony Parker, MD PhD (J.A.Parker@IEEE.org), 24

IPLab reader Wayne Rasband (wsr at nih.gov), 5

Jimi Reader… Wayne Rasband and Ulf Dittmer (udittmer at mac.com), 4

Jimi Writer… Jeffrey Kuhn (jkuhn@ccwf.cc.utexas.edu) The University of Texas at Austin, 6

Kalman filter Christopher Philip Mauer (cpmauer@northwestern.edu), 17

K-means clustering  http://ij-plugins.sourceforge.net/index.html

Leica SP Nico Stuurman (Stuurman@rulbim.leidenuniv.nl) and Wayne Rasband, 5

List LUTs G. Landini. http://www.dentistry.bham.ac.uk/landinig/software/software.html

LUT panel Patrick Pirrotte & Jerome Mutterer (jerome.mutterer at ibmp-ulp.u-strasbg.fr, http://www-ibmp.u-strasbg.fr/sg/microscopie/methods/lut/lut.htm )

Manders' Coefficients Tony Collins, Wayne Rasband

Manual Tracking  Fabrice Cordelières, Institut Curie, Orsay (France). fabrice.cordelieres at curie.u-psud.fr

Microscope scale Paul Baggethun (Paul.Baggethun@ALCOA.COM), 35

Mixture Modelling threshold Christopher Mei (christopher.mei at sophia.inria.fr)

Maximum Entropy Thresholding  http://ij-plugins.sourceforge.net/index.html

MTrack2 Nico Stuurman (nicos@itsa.ucsf.edu), 11

Multi Measure Wayne Rasband, Bob Dougherty, 8

Noran movie…Greg Joss (gjoss@bio.mq.edu.au), 4

Noran Selection… Greg Joss (gjoss@bio.mq.edu.au), 4

Noran timestamp (msec) Greg Joss <gjoss@bio.mq.edu.au>, 9

OpenLUT, 23

OrtView Paulo Bonetto (bonetto@disi.unige.it), 28

Otsu's thresholding Christopher Mei (christopher.mei at sophia.inria.fr)

PointPicker Philippe Thévenaz (philippe.thevenaz@epfl.ch), 12

Bleach Correction Tony Collins, Wayne Rasband, 31

Pseudo-flat field Tony Collins, 19

QuickTime Export Wayne Rasband, 6

QuickTime… Wayne Rasband (wsr at nih.gov), Robert Dougherty (www.optinav.com) Jeff Hardin (jdhardin at facstaff.wisc.edu), 5

Red-Green Correlator Wayne Rasband, Tony Collins, 14

RGB Grey Merge Eugene Tkachenko (etkachen@Dartmouth.EDU) & Justin D. Pearlman, 21

Selected files for stack… Albert Cardona albert@pensament.REMOVE-MEnet, 5

 Slice remover Wayne Rasband, 24

Specify Line… Wayne Rasband, 36

Specify ROI… Jeffrey Kuhn (jkuhn@ccwf.cc.utexas.edu), The University of Texas at Austin, Anthony Padua (padua001@mc.duke.edu), Duke University Medical Center, Department of Radiology, 36

Stack Builder Nicolas Roggli, Wayne Rasband, 24

Stack Combiner Wayne Rasband, 24

Stack Focuser Michael Umorin (Mikhael_Umorin@baylor.edu), 26

Stack Histogram Wayne Rasband, 32

Stack Inserter Wayne Rasband, 24

Stack reverser Wayne Rasband, 24

Stack Sorter Bob Dougherty (rpd@optinav.com), 24

Stereo pair Tony Collins, 29

Substack maker Anthony Padua (padua001 at mc.duke.edu) Daniel Barboriak, MD (barbo013 at mc.duke.edu) Neuroradiology Duke University Medical Center, 24

SurfaceJ Michael Abràmoff, http://bij.isi.uu.nl/

Threshold Colour G. Landini. http://www.dentistry.bham.ac.uk/landinig/software/software.html

Time Stamper Wayne Rasband, Tony Collins, 37

TransformJ Erik Meijering, 25

VolumeJ M. Abràmoff, http://bij.isi.uu.nl/

Volume Viewer Kai Uwe Barthel (k.barthel at fhtw-berlin.de)

Zeiss LSM Import panel… Patrick Pirrotte, Yannick Krempp, and Jerome Mutterer (jerome.mutterer@ibmp-ulp.u-strasbg.fr), 4

Zeiss ZVI Reader. Curtis Rueden <ctrueden at WISC.EDU>